PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G237100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 366aa    MW: 39847 Da    PI: 5.1627
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G237100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15178237155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s ++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+e+Aa+a++ a+ k++g
  Sobic.004G237100.1.p 178 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAAIKYWG 237
                           5799*****************877786666336************************997 PP

2AP249.31.2e-15280331155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Sobic.004G237100.1.p 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
                           57****************9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-18178247IPR016177DNA-binding domain
CDDcd000182.90E-20178246No hitNo description
PfamPF008474.0E-12179237IPR001471AP2/ERF domain
SMARTSM003803.2E-28179251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17179246IPR001471AP2/ERF domain
PROSITE profilePS5103219.296179245IPR001471AP2/ERF domain
PRINTSPR003671.4E-5180191IPR001471AP2/ERF domain
PfamPF008471.7E-9280331IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17280341IPR016177DNA-binding domain
CDDcd000182.56E-22280339No hitNo description
SMARTSM003802.2E-27281345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19281340IPR001471AP2/ERF domain
PROSITE profilePS5103218.571281339IPR001471AP2/ERF domain
PRINTSPR003671.4E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEESDVGVNP GKQMEEDKAA GVSGDEGKIE RSHSINLNRA PTVAVEARST QGNVETHGAV  60
VSGTKDAGTG KAEQSSGDGQ EKLPKCEQVD YESEIEGCVD DENPVKKAAL VTLVGNEYCG  120
GDDDERVQVL TIVKKDEPAD DIGDCINPGT VAGYSEVKGA VGASAATSAV RPAGSRSSSF  180
HGVTRHRWSG KYEAHLWDSS CRVEGRRRKG KQVYLGSYDT EEKAARAYDV AAIKYWGGNT  240
RLNFPIEQYG KELEDIRDLS REECVTYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL  300
VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYVDKGMHC IEGEGLRLLA  360
SKPEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574600.0EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681093.10.0PREDICTED: uncharacterized protein LOC100193057 isoform X1
SwissprotQ1PFE11e-83AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ38e-83AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB6SXJ50.0B6SXJ5_MAIZE; Protein BABY BOOM 2
STRINGSb04g027940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.17e-72AINTEGUMENTA-like 5